Command line bindings which are not directly associated with input parameters. If the value is a string, it is used as a string literal argument. If it is an Expression, the result of the evaluation is used as an argument.
Specifies the program to execute. If an array, the first element of
the array is the command to execute, and subsequent elements are
mandatory command line arguments. The elements in baseCommand must
appear before any command line bindings from inputBinding or
arguments.
If baseCommand is not provided or is an empty array, the first
element of the command line produced after processing inputBinding or
arguments must be used as the program to execute.
If the program includes a path separator character it must
be an absolute path, otherwise it is an error. If the program does not
include a path separator, search the $PATH variable in the runtime
environment of the workflow runner find the absolute path of the
executable.
CWL document version. Always required at the document root. Not required for a Process embedded inside another Process.
A documentation string for this object, or an array of strings which should be concatenated.
Declares hints applying to either the runtime environment or the workflow engine that may be helpful in executing this process. It is not an error if an implementation cannot satisfy all hints, however the implementation may report a warning.
The unique identifier for this object.
Defines the input parameters of the process. The process is ready to run when all required input parameters are associated with concrete values. Input parameters include a schema for each parameter which is used to validate the input object. It may also be used to build a user interface for constructing the input object.
When accepting an input object, all input parameters must have a value.
If an input parameter is missing from the input object, it must be
assigned a value of null (or the value of default for that
parameter, if provided) for the purposes of validation and evaluation
of expressions.
An identifier for the type of computational operation, of this Process. Especially useful for "class: Operation", but can also be used for CommandLineTool, Workflow, or ExpressionTool.
If provided, then this must be an IRI of a concept node that represents the type of operation, preferrably defined within an ontology.
For example, in the domain of bioinformatics, one can use an IRI from the EDAM Ontology's Operation concept nodes, like Alignment, or Clustering; or a more specific Operation concept like Split read mapping.
A short, human-readable label of this object.
Defines the parameters representing the output of the process. May be used to generate and/or validate the output object.
Exit codes that indicate the process failed due to a permanent logic error, where executing the process with the same runtime environment and same inputs is expected to always fail. If not specified, all exit codes except 0 are considered permanent failure.
Declares requirements that apply to either the runtime environment or the workflow engine that must be met in order to execute this process. If an implementation cannot satisfy all requirements, or a requirement is listed which is not recognized by the implementation, it is a fatal error and the implementation must not attempt to run the process, unless overridden at user option.
Capture the command's standard error stream to a file written to the designated output directory.
If stderr is a string, it specifies the file name to use.
If stderr is an expression, the expression is evaluated and must
return a string with the file name to use to capture stderr. If the
return value is not a string, or the resulting path contains illegal
characters (such as the path separator /) it is an error.
A path to a file whose contents must be piped into the command's standard input stream.
Capture the command's standard output stream to a file written to the designated output directory.
If stdout is a string, it specifies the file name to use.
If stdout is an expression, the expression is evaluated and must
return a string with the file name to use to capture stdout. If the
return value is not a string, or the resulting path contains illegal
characters (such as the path separator /) it is an error.
Exit codes that indicate the process completed successfully.
If not specified, only exit code 0 is considered success.
Exit codes that indicate the process failed due to a possibly temporary condition, where executing the process with the same runtime environment and inputs may produce different results.
If not specified, no exit codes are considered temporary failure.
Document fragment to load this record object from.
Base URI to generate child document IDs against.
Context for loading URIs and populating objects.
ID at this position in the document (if available)
Generated using TypeDoc
Auto-generated class implementation for https://w3id.org/cwl/cwl#CommandLineTool
This defines the schema of the CWL Command Line Tool Description document.